Search for: All records

Migration, the recurring movement of animals between habitats, can exert pressures on the pathogens they host. Properties of host populations can determine pathogen strategy (e.g. virulence) to increase pathogen fitness. To study the effect of adding a resistant compartment on virulence evolution, we developed an SIRS model and examined the winning pathogen strategy across different rates of recovery and of immunity loss. We find that when hosts spend a relatively long time in the resistant compartment, a more virulent pathogen evolves. These results have implications in conservation of migratory animal populations afflicted by disease. 

The Carbon in Permafrost Experimental Heating Research (CiPEHR) project addresses the following questions: 1) Does ecosystem warming cause a net release of C from the ecosystem to the atmosphere?, 2) Does the decomposition of old C, that comprises the bulk of the soil C pool, influence ecosystem C loss?, and 3) How do winter and summer warming alone, and in combination, affect ecosystem C exchange? We are answering these questions using a combination of field and laboratory experiments to measure ecosystem carbon balance and radiocarbon isotope ratios at a warming experiment located in an upland tundra field site near Healy, Alaska in the foothills of the Alaska Range. This data set includes weekly thaw depth measurements collected from winter warming, summer warming, and control treatment plots at CiPEHR. Additional measurements from on-plot gas flux wells, water table monitoring wells, and off-plot locations are also reported. Note that the experimental warming portion of this experiment concluded in 2022. These data are a continuation of measurements taken at previously warmed plots but plots were not actively manipulated after 2022. At the Gradient Thaw Site, in this larger study, we are asking the question: Is old carbon that comprises the bulk of the soil organic matter pool released in response to thawing of permafrost? We are answering this question by using a combination of field and laboratory experiments to measure radiocarbon isotope ratios in soil organic matter, soil respiration, and dissolved organic carbon, in tundra ecosystems. The objective of these proposed measurements is to develop a mechanistic understanding of the SOM sources contributing to C losses following permafrost thawing. We are making these measurements at an established tundra field site near Healy, Alaska in the foothills of the Alaska Range. Field measurements center on a natural experiment where permafrost has been observed to warm and thaw over the past several decades. This area represents a gradient of sites each with a different degree of change due to permafrost thawing. As such, this area is unique for addressing questions at the time and spatial scales relevant for change in arctic ecosystems. 

The spread of parasites and the emergence of disease are currently threatening global biodiversity and human welfare. To address this threat, we need to better understand those factors that determine parasite persistence and prevalence. It is known that dispersal is central to the spatial dynamics of host–parasite systems. Yet past studies have typically assumed that dispersal is a species-level constant, despite a growing body of empirical evidence that dispersal varies with ecological context, including the risk of infection and aspects of host state such as infection status (parasite-dependent dispersal; PDD). Here, we develop a metapopulation model to understand how different forms of PDD shape the prevalence of a directly transmitted parasite. We show that increasing host dispersal rate can increase, decrease or cause a non-monotonic change in regional parasite prevalence, depending on the type of PDD and characteristics of the host–parasite system (transmission rate, virulence, and dispersal mortality). This result contrasts with previous studies with parasite-independent dispersal which concluded that prevalence increases with host dispersal rate. We argue that accounting for host dispersal responses to parasites is necessary for a complete understanding of host–parasite dynamics and for predicting how parasite prevalence will respond to changes such as human alteration of landscape connectivity. This article is part of the theme issue ‘Diversity-dependence of dispersal: interspecific interactions determine spatial dynamics’. 

The Carbon in Permafrost Experimental Heating Research (CiPEHR) project addresses the following questions: 1) Does ecosystem warming cause a net release of C from the ecosystem to the atmosphere?, 2) Does the decomposition of old C, that comprises the bulk of the soil C pool, influence ecosystem C loss?, and 3) How do winter and summer warming alone, and in combination, affect ecosystem C exchange? We are answering these questions using a combination of field and laboratory experiments to measure ecosystem carbon balance and radiocarbon isotope ratios at a warming experiment located in an upland tundra field site near Healy, Alaska in the foothills of the Alaska Range. This data set includes weekly thaw depth measurements collected from winter warming, summer warming, and control treatment plots at CiPEHR. Additional measurements from on-plot gas flux wells, water table monitoring wells, and off-plot locations are also reported. Note that the experimental warming portion of this experiment concluded in 2022. These data are a continuation of measurements taken at previously warmed plots but plots were not actively manipulated after 2022. 

In this larger study, we are asking the question: Is old carbon that comprises the bulk of the soil organic matter pool released in response to thawing of permafrost? We are answering this question by using a combination of field and laboratory experiments to measure radiocarbon isotope ratios in soil organic matter, soil respiration, and dissolved organic carbon, in tundra ecosystems. The objective of these proposed measurements is to develop a mechanistic understanding of the SOM sources contributing to C losses following permafrost thawing. We are making these measurements at an established tundra field site near Healy, Alaska in the foothills of the Alaska Range. Field measurements center on a natural experiment where permafrost has been observed to warm and thaw over the past several decades. This area represents a gradient of sites each with a different degree of change due to permafrost thawing. As such, this area is unique for addressing questions at the time and spatial scales relevant for change in arctic ecosystems. 

Abstract Changes to migration routes and phenology create novel contact patterns among hosts and pathogens. These novel contact patterns can lead to pathogens spilling over between resident and migrant populations. Predicting the consequences of such pathogen spillover events requires understanding how pathogen evolution depends on host movement behaviour. Following spillover, pathogens may evolve changes in their transmission rate and virulence phenotypes because different strategies are favoured by resident and migrant host populations. There is conflict in current theoretical predictions about what those differences might be. Some theory predicts lower pathogen virulence and transmission rates in migrant populations because migrants have lower tolerance to infection. Other theoretical work predicts higher pathogen virulence and transmission rates in migrants because migrants have more contacts with susceptible hosts.We aim to understand how differences in tolerance to infection and host pace of life act together to determine the direction of pathogen evolution following pathogen spillover from a resident to a migrant population.We constructed a spatially implicit model in which we investigate how pathogen strategy changes following the addition of a migrant population. We investigate how differences in tolerance to infection and pace of life between residents and migrants determine the effect of spillover on pathogen evolution and host population size.When the paces of life of the migrant and resident hosts are equal, larger costs of infection in the migrants lead to lower pathogen transmission rate and virulence following spillover. When the tolerance to infection in migrant and resident populations is equal, faster migrant paces of life lead to increased transmission rate and virulence following spillover. However, the opposite can also occur: when the migrant population has lower tolerance to infection, faster migrant paces of life can lead to decreases in transmission rate and virulence.Predicting the outcomes of pathogen spillover requires accounting for both differences in tolerance to infection and pace of life between populations. It is also important to consider how movement patterns of populations affect host contact opportunities for pathogens. These results have implications for wildlife conservation, agriculture and human health. 

Theory is a critical component of the biological research process, and complements observational and experimental approaches. However, most biologists receive little training on how to frame a theoretical question and, thus, how to evaluate when theory has successfully answered the research question. Here, we develop a guide with six verbal framings for theoretical models in biology. These correspond to different personas one might adopt as a theorist: ‘Advocate’, ‘Explainer’, ‘Instigator’, ‘Mediator’, ‘Semantician' and ‘Tinkerer’. These personas are drawn from combinations of two starting points (pattern or mechanism) and three foci (novelty, robustness or conflict). We illustrate each of these framings with examples of specific theoretical questions, by drawing on recent theoretical papers in the fields of ecology and evolutionary biology. We show how the same research topic can be approached from slightly different perspectives, using different framings. We show how clarifying a model’s framing can debunk common misconceptions of theory: that simplifying assumptions are bad, more detail is always better, models show anything you want and modelling requires substantial maths knowledge. Finally, we provide a roadmap that researchers new to theoretical research can use to identify a framing to serve as a blueprint for their own theoretical research projects. 

Context.As the nearest accessible massive early-type galaxy, NGC 5128 presents an exceptional opportunity to measure dark matter halo parameters for a representative elliptical galaxy. Aims.Here we take advantage of rich new observational datasets of large-radius tracers to perform dynamical modeling of NGC 5128 Methods.We used a discrete axisymmetric anisotropic Jeans approach with a total tracer population of nearly 1800 planetary nebulae, globular clusters, and dwarf satellite galaxies extending to a projected distance of ∼250 kpc from the galaxy center to model the dynamics of NGC 5128. Results.We find that a standard Navarro-Frenk-White (NFW) halo provides an excellent fit to nearly all the data, except for a subset of the planetary nebulae that appear to be out of virial equilibrium. The best-fit dark matter halo has a virial mass ofM_vir = 4.4_−1.4^+2.4 × 10¹² M_⊙, and NGC 5128 appears to sit below the mean stellar mass–halo mass and globular cluster mass–halo mass relations, which both predict a halo virial mass closer toM_vir ∼ 10¹³ M_⊙. The inferred NFW virial concentration isc_vir = 5.6_−1.6^+2.4, which is nominally lower thanc_vir ∼ 9 predicted from publishedc_vir–M_virrelations, but within the ∼30% scatter found in simulations. The best-fit dark matter halo constitutes only ∼10% of the total mass at one effective radius but ∼50% at five effective radii. The derived halo parameters are consistent within the uncertainties for models with differing tracer populations, anisotropies, and inclinations. Conclusions.Our analysis highlights the value of comprehensive dynamical modeling of nearby galaxies and the importance of using multiple tracers to allow cross-checks for model robustness. 

Who conducts biological research, where they do it and how results are disseminated vary among geographies and identities. Identifying and documenting these forms of bias by research communities is a critical step towards addressing them. We documented perceived and observed biases in movement ecology, a rapidly expanding sub-discipline of biology, which is strongly underpinned by fieldwork and technology use. We surveyed attendees before an international conference to assess a baseline within-discipline perceived bias (uninformed perceived bias). We analysed geographic patterns inMovement Ecologyarticles, finding discrepancies between the country of the authors’ affiliation and study site location, related to national economics. We analysed race-gender identities of USA biology researchers (the closest to our sub-discipline with data available), finding that they differed from national demographics. Finally, we discussed the quantitatively observed bias at the conference, to assess within-discipline perceived bias informed with observational data (informed perceived bias). Although the survey indicated most conference participants as bias-aware, conversations only covered a subset of biases. We discuss potential causes of bias (parachute-science, fieldwork accessibility), solutions and the need to evaluate mitigatory action effectiveness. Undertaking data-driven analysis of bias within sub-disciplines can help identify specific barriers and move towards the inclusion of a greater diversity of participants in the scientific process.